Theses most similar to those of author Reeder, Christopher Campbell
A novel computational method for inferring dynamic genetic regulatory trajectories (2008) read it
Inferring interactions, expression programs and regulatory networks from high throughput biological data
Bar-Joseph, Ziv, 1971- (2003)
- Advisors: David K. Gifford; Jaakkola, Tommi S. (Tommi Sakari)
- Department of Electrical Engineering and Computer Science
Extracting regulatory signals from DNA sequences using syntactic pattern discovery
Gupta, Vipin, 1978- (2004)
- Advisor: Gregory Stephanopoulos
- Department of Chemical Engineering
- Advisor: Leonid Mirny
- Department of Physics
- Advisors: Moe Z. Win; Pamela Silver
- Department of Electrical Engineering and Computer Science
Exploiting biological pathways to infer temporal gene interaction models
Kemper, Corey Ann, 1979- (2006)
- Advisors: ; Grimson, William Eric Leifur; John Fisher
- Department of Electrical Engineering and Computer Science
- Advisor: Gregory Stephanopoulos
- Department of Chemical Engineering
Selecting high-confidence predictions from ordinary differential equation models of biological networks
Bever, Caitlin Anne (2008)
- Advisor: Bruce Tidor
- Biological Engineering Division
Some methods and models for analyzing time-series gene expression data
Jammalamadaka, Arvind K. (Arvind Kumar), 1981- (2009)
- Advisor: David K. Gifford
- Department of Electrical Engineering and Computer Science
Spatial and temporal coupling models for the discovery of binding events in ChIP-Seq data
Papachristoudis, Georgios (2010)
- Advisor: David K. Gifford
- Department of Electrical Engineering and Computer Science
Dissecting the spatial structure of overlapping transcription in budding yeast
Danford, Timothy W. (Timothy William), 1979- (2010)
- Advisor: David K. Gifford
- Department of Electrical Engineering and Computer Science
Identifying chromatin interactions at high spatial resolution (2014) read it
Gene identification using phylogenetic metrics with conditional random fields
Deoras, Ameya Nitin (2007)
- Advisor: Manolis Kellis
- Department of Electrical Engineering and Computer Science
A general framework for genome interpretation using evolutionary signatures
Fujiwara, Guilherme Issao Camarinha (2008)
- Advisor: Manolis Kellis
- Department of Electrical Engineering and Computer Science
Ruler arrays detect genomic insertions and deletions
Rolfe, P. Alexander (Philip Alexander), 1979- (2009)
- Advisor: David K. Gifford
- Department of Electrical Engineering and Computer Science
Dissecting the spatial structure of overlapping transcription in budding yeast
Danford, Timothy W. (Timothy William), 1979- (2010)
- Advisor: David K. Gifford
- Department of Electrical Engineering and Computer Science
A constraint optimization framework for discovery of cellular signaling and regulatory networks
Huang, Shao-shan Carol (2011)
- Advisor: Ernest Fraenkel
- Computational and Systems Biology Program
Computational methods for high-throughput pooled genetic experiments
Edwards, Matthew Douglas (2011)
- Advisor: David K. Gifford
- Department of Electrical Engineering and Computer Science
Incorporating diverse data to improve genetic network alignment with IsoRank
Eisner, Eric David (2011)
- Advisor: Bonnie Berger
- Department of Electrical Engineering and Computer Science
Simultaneous computational discovery of DNA regulatory motifs and transcription factor binding constraints at high spatial resolution
Guo, Yuchun (2012)
- Advisor: David K. Gifford
- Computational and Systems Biology Program
- Advisor: Leonid Mirny
- Department of Physics
Convergence of regulatory mutations into oncogenic pathways across multiple tumor types
Murugadoss, Karthik (2017)
- Advisor: Manolis Kellis
- Computation for Design and Optimization Program