Theses most similar to Dissecting the spatial structure of overlapping transcription in budding yeast (Danford, Timothy W. (Timothy William), 1979-; 2010) read it
Inferring interactions, expression programs and regulatory networks from high throughput biological data
Bar-Joseph, Ziv, 1971- (2003)
- Advisors: David K. Gifford; Jaakkola, Tommi S. (Tommi Sakari)
- Department of Electrical Engineering and Computer Science
- Advisor: Gregory Stephanopoulos
- Department of Chemical Engineering
A novel computational method for inferring dynamic genetic regulatory trajectories
Reeder, Christopher Campbell (2008)
- Advisor: David K. Gifford
- Department of Electrical Engineering and Computer Science
A general framework for genome interpretation using evolutionary signatures
Fujiwara, Guilherme Issao Camarinha (2008)
- Advisor: Manolis Kellis
- Department of Electrical Engineering and Computer Science
Spatial and temporal coupling models for the discovery of binding events in ChIP-Seq data
Papachristoudis, Georgios (2010)
- Advisor: David K. Gifford
- Department of Electrical Engineering and Computer Science
Simultaneous computational discovery of DNA regulatory motifs and transcription factor binding constraints at high spatial resolution
Guo, Yuchun (2012)
- Advisor: David K. Gifford
- Computational and Systems Biology Program
Characterizing non-coding hits in genome-wide association studies using epigenetic data
Sarkar, Abhishek Kulshreshtha (2013)
- Advisor: Manolis Kellis
- Department of Electrical Engineering and Computer Science
- Advisor: David K. Gifford
- Department of Electrical Engineering and Computer Science
Computational personal genomics : understanding the functional effects of sequence variation
Altshuler, Robert C. (Robert Charles) (2016)
- Advisor: Manolis Kellis
- Department of Electrical Engineering and Computer Science
Convergence of regulatory mutations into oncogenic pathways across multiple tumor types
Murugadoss, Karthik (2017)
- Advisor: Manolis Kellis
- Computation for Design and Optimization Program