Theses most similar to A novel computational method for inferring dynamic genetic regulatory trajectories (Reeder, Christopher Campbell; 2008) read it
Inferring interactions, expression programs and regulatory networks from high throughput biological data
Bar-Joseph, Ziv, 1971- (2003)
- Advisors: David K. Gifford; Jaakkola, Tommi S. (Tommi Sakari)
- Department of Electrical Engineering and Computer Science
Extracting regulatory signals from DNA sequences using syntactic pattern discovery
Gupta, Vipin, 1978- (2004)
- Advisor: Gregory Stephanopoulos
- Department of Chemical Engineering
- Advisor: Leonid Mirny
- Department of Physics
- Advisors: Moe Z. Win; Pamela Silver
- Department of Electrical Engineering and Computer Science
Exploiting biological pathways to infer temporal gene interaction models
Kemper, Corey Ann, 1979- (2006)
- Advisors: ; Grimson, William Eric Leifur; John Fisher
- Department of Electrical Engineering and Computer Science
- Advisor: Gregory Stephanopoulos
- Department of Chemical Engineering
Selecting high-confidence predictions from ordinary differential equation models of biological networks
Bever, Caitlin Anne (2008)
- Advisor: Bruce Tidor
- Biological Engineering Division
Some methods and models for analyzing time-series gene expression data
Jammalamadaka, Arvind K. (Arvind Kumar), 1981- (2009)
- Advisor: David K. Gifford
- Department of Electrical Engineering and Computer Science
Spatial and temporal coupling models for the discovery of binding events in ChIP-Seq data
Papachristoudis, Georgios (2010)
- Advisor: David K. Gifford
- Department of Electrical Engineering and Computer Science
Dissecting the spatial structure of overlapping transcription in budding yeast
Danford, Timothy W. (Timothy William), 1979- (2010)
- Advisor: David K. Gifford
- Department of Electrical Engineering and Computer Science