Theses most similar to those of author Danford, Timothy W. (Timothy William), 1979-
Integrating genomic conservation data with motif discovery (2004) read it
Extracting regulatory signals from DNA sequences using syntactic pattern discovery
Gupta, Vipin, 1978- (2004)
- Advisor: Gregory Stephanopoulos
- Department of Chemical Engineering
Identification, improved modeling and integration of signals to predict constitutive and altering splicing
Yeo, Gene W. (Gene Wei-Ming), 1977- (2004)
- Advisor: Tomaso Poggio
- Department of Brain and Cognitive Sciences
Development of gene-finding algorithms for fungal genomes : dealing with small datasets and leveraging comparative genomics
Lazarovici, Allan, 1979- (2003)
- Advisor: Christopher Burge
- Department of Electrical Engineering and Computer Science
- Advisors: George C. Verghese; Peter C. Doerschuk
- Department of Electrical Engineering and Computer Science
- Advisor: James B. Orlin
- Department of Electrical Engineering and Computer Science
Comparative gene identification in mammalian, fly, and fungal genomes
Lin, Michael F. (Michael Fong-Jay) (2006)
- Advisor: Manolis Kellis
- Department of Electrical Engineering and Computer Science
Computational prediction of RNA-based gene regulatory mechanisms in human and Tetrahymena
Kitzman, Jacob O (2006)
- Advisor: Christopher B. Burge
- Department of Electrical Engineering and Computer Science
- Advisor: Christopher B. Burge
- Department of Mathematics
- Advisor: Bonnie Berger
- Department of Mathematics
- Advisor: David Gifford
- Department of Electrical Engineering and Computer Science
Dissecting the spatial structure of overlapping transcription in budding yeast (2010) read it
Inferring interactions, expression programs and regulatory networks from high throughput biological data
Bar-Joseph, Ziv, 1971- (2003)
- Advisors: David K. Gifford; Jaakkola, Tommi S. (Tommi Sakari)
- Department of Electrical Engineering and Computer Science
- Advisor: Gregory Stephanopoulos
- Department of Chemical Engineering
A novel computational method for inferring dynamic genetic regulatory trajectories
Reeder, Christopher Campbell (2008)
- Advisor: David K. Gifford
- Department of Electrical Engineering and Computer Science
A general framework for genome interpretation using evolutionary signatures
Fujiwara, Guilherme Issao Camarinha (2008)
- Advisor: Manolis Kellis
- Department of Electrical Engineering and Computer Science
Spatial and temporal coupling models for the discovery of binding events in ChIP-Seq data
Papachristoudis, Georgios (2010)
- Advisor: David K. Gifford
- Department of Electrical Engineering and Computer Science
Simultaneous computational discovery of DNA regulatory motifs and transcription factor binding constraints at high spatial resolution
Guo, Yuchun (2012)
- Advisor: David K. Gifford
- Computational and Systems Biology Program
Characterizing non-coding hits in genome-wide association studies using epigenetic data
Sarkar, Abhishek Kulshreshtha (2013)
- Advisor: Manolis Kellis
- Department of Electrical Engineering and Computer Science
- Advisor: David K. Gifford
- Department of Electrical Engineering and Computer Science
Computational personal genomics : understanding the functional effects of sequence variation
Altshuler, Robert C. (Robert Charles) (2016)
- Advisor: Manolis Kellis
- Department of Electrical Engineering and Computer Science
Convergence of regulatory mutations into oncogenic pathways across multiple tumor types
Murugadoss, Karthik (2017)
- Advisor: Manolis Kellis
- Computation for Design and Optimization Program