Theses most similar to Gene identification using phylogenetic metrics with conditional random fields (Deoras, Ameya Nitin; 2007) read it
Identification, improved modeling and integration of signals to predict constitutive and altering splicing
Yeo, Gene W. (Gene Wei-Ming), 1977- (2004)
- Advisor: Tomaso Poggio
- Department of Brain and Cognitive Sciences
Comparative gene identification in mammalian, fly, and fungal genomes
Lin, Michael F. (Michael Fong-Jay) (2006)
- Advisor: Manolis Kellis
- Department of Electrical Engineering and Computer Science
Algorithms for simulating human pre-mRNA splicing decisions
Rolish, Michael E. (Michael Edward) (2005)
- Advisor: Christopher B. Burge
- Department of Electrical Engineering and Computer Science
Computational prediction of RNA-based gene regulatory mechanisms in human and Tetrahymena
Kitzman, Jacob O (2006)
- Advisor: Christopher B. Burge
- Department of Electrical Engineering and Computer Science
A general framework for genome interpretation using evolutionary signatures
Fujiwara, Guilherme Issao Camarinha (2008)
- Advisor: Manolis Kellis
- Department of Electrical Engineering and Computer Science
Identifying protein-coding genes and synonymous constraint elements using phylogenetic codon models
Lin, Michael F. (Michael Fong-Jay) (2012)
- Advisor: Manolis Kellis
- Department of Electrical Engineering and Computer Science
- Advisor: Bonnie Berger
- Department of Mathematics
Classification of genes using clustering of chromatin state segmentations in human epigenomes
Kumar, Nischay (2013)
- Advisor: Manolis Kellis
- Department of Electrical Engineering and Computer Science
- Advisor: Matthew L. Eaton
- Department of Electrical Engineering and Computer Science
- Advisor: Timothy M. Shank
- Department of Biology