Theses most similar to those of author Doherty, Matthew K
Gene prediction with conditional random fields (2007) read it
Identification, improved modeling and integration of signals to predict constitutive and altering splicing
Yeo, Gene W. (Gene Wei-Ming), 1977- (2004)
- Advisor: Tomaso Poggio
- Department of Brain and Cognitive Sciences
Computational prediction of RNA-based gene regulatory mechanisms in human and Tetrahymena
Kitzman, Jacob O (2006)
- Advisor: Christopher B. Burge
- Department of Electrical Engineering and Computer Science
- Advisor: Gregory Stephanopoulos
- Department of Chemical Engineering
Gene identification using phylogenetic metrics with conditional random fields
Deoras, Ameya Nitin (2007)
- Advisor: Manolis Kellis
- Department of Electrical Engineering and Computer Science
A general framework for genome interpretation using evolutionary signatures
Fujiwara, Guilherme Issao Camarinha (2008)
- Advisor: Manolis Kellis
- Department of Electrical Engineering and Computer Science
Dissecting the spatial structure of overlapping transcription in budding yeast
Danford, Timothy W. (Timothy William), 1979- (2010)
- Advisor: David K. Gifford
- Department of Electrical Engineering and Computer Science
Methods and analysis of genome-scale gene family evolution across multiple species
Rasmussen, Matthew D. (Matthew David) (2010)
- Advisor: Manolis Kellis
- Department of Electrical Engineering and Computer Science
- Advisor: Bonnie Berger
- Department of Mathematics
Identifying protein-coding genes and synonymous constraint elements using phylogenetic codon models
Lin, Michael F. (Michael Fong-Jay) (2012)
- Advisor: Manolis Kellis
- Department of Electrical Engineering and Computer Science
- Advisor: Bonnie Berger
- Department of Mathematics