Theses most similar to Structure-based realignment of non-coding RNAs in multiple whole genome alignments (Yu, Michael Ku; 2011) read it
Identification, improved modeling and integration of signals to predict constitutive and altering splicing
Yeo, Gene W. (Gene Wei-Ming), 1977- (2004)
- Advisor: Tomaso Poggio
- Department of Brain and Cognitive Sciences
Computational prediction of RNA-based gene regulatory mechanisms in human and Tetrahymena
Kitzman, Jacob O (2006)
- Advisor: Christopher B. Burge
- Department of Electrical Engineering and Computer Science
Probabilistic framework for genome-wide phylogeny and ortholog determination
Rasmussen, Matthew D. (Matthew David) (2006)
- Advisor: Manolis Kellis
- Department of Electrical Engineering and Computer Science
- Advisor: Bonnie Berger
- Department of Electrical Engineering and Computer Science
Motifs, binding, and expression : computational studies of transcriptional regulation
MacIsaac, Kenzie D. (Kenzie Daniel), 1975- (2009)
- Advisor: Ernest Fraenkel
- Department of Electrical Engineering and Computer Science
- Advisor: Manolis Kellis
- Department of Electrical Engineering and Computer Science
Identifying protein-coding genes and synonymous constraint elements using phylogenetic codon models
Lin, Michael F. (Michael Fong-Jay) (2012)
- Advisor: Manolis Kellis
- Department of Electrical Engineering and Computer Science
- Advisor: Bonnie Berger
- Department of Electrical Engineering and Computer Science
Uncovering the variability, regulatory roles and mutation rates of short tandem repeats
Willems, Thomas F. (Thomas Frederick) (2016)
- Advisors: Manolis Kellis; Yaniv Erlic
- Computational and Systems Biology Program
- Advisor: David K. Gifford
- Department of Electrical Engineering and Computer Science